http://cmci.embl.de/ 2012-05-17T04:29:07+02:00 http://cmci.embl.de/ http://cmci.embl.de/lib/images/favicon.ico text/html 2012-05-16T17:18:20+02:00 Kota Miura http://cmci.embl.de/documents/120206pyip_cooking/python_imagej_cookbook?rev=1337181500&do=diff Jython Interpreter A way to run jython script from jython interpreter, interactively. Of course you could do this by clicking 'run' for scripts opened in script editor as well, but in this way, you could still interact with the objects created by the execfile. text/html 2012-05-15T21:40:48+02:00 Kota Miura http://cmci.embl.de/playground/latextodoku?rev=1337110848&do=diff * an item * element * eleent * another item text/html 2012-05-15T21:35:36+02:00 Kota Miura http://cmci.embl.de/playground/playground?rev=1337110536&do=diff test mark down test doku_tex test gist rss test test latex2doku text/html 2012-05-15T21:34:09+02:00 Kota Miura http://cmci.embl.de/playground/rssfeed?rev=1337110449&do=diff diigo test text/html 2012-05-15T21:33:36+02:00 Kota Miura http://cmci.embl.de/playground/gist?rev=1337110416&do=diff gist test text/html 2012-05-15T14:56:49+02:00 Kota Miura http://cmci.embl.de/playground/doku_tex?rev=1337086609&do=diff Kota Miura September 15, 2011 \maketitle\tableofcontents Aim Analysis of cell shape dynamics before/during the invagination of Drosophila embryo. last update: 20110920 Methods To study the details of cell shape changes during the invagination in Drosophila, each cell should be segmented. Image sequences were preprocessed and segmented by following procedure. Unless some notice is made, native function and modules of ImageJ was used. text/html 2012-05-14T17:38:22+02:00 Kota Miura http://cmci.embl.de/mainpages/bpjc?rev=1337009902&do=diff Organizers: <wanqing.xiang@embl.de>, <justus.fuesers@embl.de> Next session Mai 25, 2012: Stefan Gunther Classifying general nonlinear force laws in cell-based models via the continuum limit * Phys. Rev. E 85, 021921 (2012) Previous sessions Mai 10, 2012: Martin Schorb Single-wavelength two-photon excitation– stimulated emission depletion (SW2PE-STED) superresolution imaging, Bianchini et al., 2011, PNAS text/html 2012-05-14T17:21:35+02:00 Kota Miura http://cmci.embl.de/playground/markdown?rev=1337008895&do=diff Kota Miura \[ Cost=((x_{t+1}-x_{t})^{2}) + (y_{t+1}-y_{t})^{2}) + \frac{2}{A_{t}}abs(A_{t} - A_{t+1}) \] where is the centroid coordinate and \(A_{t}\) is cell area at time point $t$. text/html 2012-05-14T17:06:56+02:00 Kota Miura http://cmci.embl.de/mainpages/documents?rev=1337008016&do=diff Lecture Notes, Course Protocols * EMBO Microinjection Course Reference List (07-03-28) * Practical: Analysis of Phototaxis Developmental Biology Predoc Course, Behavior Module (09-11-25) * Vector Field Analysis (10-03-03) * Lecture Notes: Measuring movement of vesicles, virus and cells EMBL Practical Course Advanced Microscopy (10-03-11) text/html 2012-05-14T16:50:57+02:00 Kota Miura http://cmci.embl.de/documents/111100embocourse?rev=1337007057&do=diff * Kota Miura * a procatical prepared for the EMBO Cell Biology Course 2011. text/html 2012-05-14T15:51:46+02:00 Kota Miura http://cmci.embl.de/shared/sidebar?rev=1337003506&do=diff Top Mission CMCI Seminar Courses Documents Downloads GitHub Links Calendar Bioclips Weblog Hand Picked Papers Sitemap Discussions Change log ---------- Contact CMCI Alumni ALMF EMBL Heidelberg EMBL Intranet Biophysics Journal Club text/html 2012-05-14T15:51:28+02:00 Kota Miura http://cmci.embl.de/start?rev=1337003488&do=diff CMCI@EMBL drives image analysis / processing activity by power of human networking. Please feel free to comment on any page. [EMBL CMS] N E W S text/html 2012-05-14T15:49:28+02:00 Kota Miura http://cmci.embl.de/blogtng/2012-05-14/latex_to_dokuwiki?rev=1337003368&do=diff text/html 2012-05-10T17:36:21+02:00 Kota Miura http://cmci.embl.de/blogtng/2012-05-01/isbi_2012_satellite_meeting?rev=1336664181&do=diff A picture with the ImageJ founder, Wayne Rusband. A meeting titled “Bioimage analysis software: is there a future beyond ImageJ?” took place in Barcelona between April 31st and May 1st (<http://bigwww.epfl.ch/eurobioimaging/>). Some key presentations were given by Wayne Rusband, Johannes Schindlin, Curtis Rueden and all the famous developers among ImageJ community and more software such as Icy and BioimageXD.