http://cmci.embl.de/ 2012-05-17T04:29:40+02:00 http://cmci.embl.de/ http://cmci.embl.de/lib/images/favicon.ico text/html 2012-05-04T02:31:32+02:00 http://cmci.embl.de/downloads/3dtrackviewer?rev=1336091492&do=diff Author Kota Miura Centre for Molecular and Cellular Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History * 2012-04-23 First Version * recent log Source Released under the GNU General Public License v2. text/html 2012-04-25T16:13:04+02:00 http://cmci.embl.de/downloads/bleach_corrector?rev=1335363184&do=diff Author Kota Miura Centre for Molecular and Cellular Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History * 10-09-15 First Version * 12-04-16 Compiled with JRE 1.6.0_20 Source Released under the GNU General Public License v2. text/html 2012-02-19T22:47:59+02:00 http://cmci.embl.de/downloads/drop_script?rev=1329688079&do=diff Author Kota Miura Centre for Molecular and Cellualr Imaging (CMCI), EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History 2011-07-25 * First release 2012-02-19 * additional capability for dropping jython files * fixed a bug: Drop Script window was listed in the menu “windows” even after closing, but now it disappears as it should be. text/html 2010-03-05T21:23:49+02:00 http://cmci.embl.de/downloads/dvheaderreader?rev=1267820629&do=diff For dealing with Collapsed DV files. Author Kota Miura Centre for Molecular and Cellular Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History * 05-05-13 * Header size of .dv file is calculated from the width and height of the frame, frame number. * General rule is:??? * static header length: 528pixels (1056bytes) + dynamic headers (80 pixels/frame, 160 bytes/frame) * information for each frame is contained in the first 20 pixels (40bytes)… text/html 2010-04-08T16:37:29+02:00 http://cmci.embl.de/downloads/frap_analysis.html?rev=1270737449&do=diff this page has moved to: <http://cmci.embl.de/downloads/frap_analysis> text/html 2012-02-07T14:25:51+02:00 http://cmci.embl.de/downloads/frap_analysis?rev=1328621151&do=diff Analyze FRAP curves and get parameter by curve fitting (documentation.). Lecture notes are also available ( Lecture Notes (Apr. 2010)) Author Kota Miura Centre for Molecular and Cellular Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 text/html 2010-03-03T16:42:58+02:00 http://cmci.embl.de/downloads/frapdocumentation?rev=1267630978&do=diff text/html 2010-04-08T16:38:49+02:00 http://cmci.embl.de/downloads/frapmanual.htm?rev=1270737529&do=diff This page has moved to: <http://cmci.embl.de/documents/frapmanu> text/html 2010-08-06T16:33:40+02:00 http://cmci.embl.de/downloads/hyperstackexporttoimaris?rev=1281105220&do=diff Author Kota Miura Centre for Molecular and Cellular Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History * 10-08-06 First Version. Source Released under the GNU General Public License. Requires ImageJ ver 1.37j or higher (ImageJ, upgrade page). text/html 2010-03-11T10:18:26+02:00 http://cmci.embl.de/downloads/kymoquant?rev=1268299106&do=diff Quantitative analysis of ambiguous patterns in kymograph Author Kota Miura Centre for Molecular and Cellular Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History * 10-03-03 ? first version released Source Released under the GNU General Public License. text/html 2010-12-07T15:55:23+02:00 http://cmci.embl.de/downloads/npp_syntaxhighlighter?rev=1291733723&do=diff Configuration file (xml) for syntax highlighting of |ImageJ Macro codes in Notepad++. Author Kota Miura Centre for Molecular and Cellular Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History * 10-11-06 first version released text/html 2011-08-26T14:14:05+02:00 http://cmci.embl.de/downloads/particletracker2d?rev=1314360845&do=diff Author Kota Miura Centre for Molecular and Cellualr Imaging (CMCI), EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History 10-11-19 First release Source <https://github.com/cmci/ParticleTrackerExt> Installation Download ParticleTracker_.jar and place it in the ImageJ plugin folder. text/html 2010-03-05T21:23:07+02:00 http://cmci.embl.de/downloads/pefileto3dstacks?rev=1267820587&do=diff Author Kota Miura Centre for Molecular and Cellular Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History 2007/6/5: 1st version Source Released under the GNU General Public License. Requires ImageJ ver 1.37j or higher (ImageJ, upgrade page). text/html 2010-03-05T21:22:10+02:00 http://cmci.embl.de/downloads/running3dprojector?rev=1267820530&do=diff Author Kota Miura Centre for Molecular and Cellular Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History * 08-08-27 ? first version released * 08-08-28 ? Formatted user interface added Source Released under the GNU General Public License. text/html 2010-03-05T21:20:23+02:00 http://cmci.embl.de/downloads/spindlefanalyzer?rev=1267820423&do=diff Spindle Microtubule Frap / Flip Analyzer Author Kota Miura Centre for Molecular and Cellualr Imaging (CMCI), EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History 08-08-12? First release Source Released under the GNU General Public License. text/html 2010-03-05T21:14:53+02:00 http://cmci.embl.de/downloads/stack_manager?rev=1267820093&do=diff Author Kota Miura Centre for Molecular and Cellular Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History * 03-01-13 First Version * 05-07-19 “Hurricane” (original macro in Hurricane.txt) * 05-09-30 ROI store&regenerator * 06-04-18 added two macros (related to Virginie): * easy space equalizer * 3D sequence renderer text/html 2010-03-05T11:29:10+02:00 http://cmci.embl.de/downloads/stackmanager?rev=1267784950&do=diff Author Kota Miura Centre for Molecular and Cellular Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History * 03-01-13 First Version * 05-07-19 “Hurricane” (original macro in Hurricane.txt) * 05-09-30 ROI store&regenerator * 06-04-18 added two macros (related to Virginie): * easy space equalizer * 3D sequence renderer text/html 2012-04-26T11:34:30+02:00 http://cmci.embl.de/downloads/start?rev=1335432870&do=diff We welcome your comments and suggestions. Type Name Platform Author Last UpDate Analysis Frap Analysis ver 9 IgorPro Kota Miura 10-03-03 Spindle FRAP/FLIP analyze ImageJ Kota Miura 08-08-12 Kymoquant ImageJ Kota Miura 10-03-03 -- automated analysis of kymograph ParticleTracker ImageJ Kota Miura 10-11-19 Stack Tools Time Series color coder ImageJ Kota Miura 08-07-23 Running 3D-Projector ImageJ Kota Miura 08-08-29 Stack Manager ImageJ Kota Miura 0… text/html 2010-12-06T21:26:51+02:00 http://cmci.embl.de/downloads/timeseriescolorcoder?rev=1291667211&do=diff Color coding traces by time. Author Kota Miura Centre for Molecular and Cellualr Imaging (CMCI) EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404 History * 08-02-12 created ver.1 K_TimeRGBcolorcode.ijm * 08-02-13 stack slice range option added. * time color code scale option added. * future probable addiition: none-linear assigning of gray intensity to color intensity * -> but this is same as doing contrast enhancement before processing. text/html 2010-12-22T01:04:00+02:00 http://cmci.embl.de/downloads/vim_syntaxhighlighter?rev=1292976240&do=diff “” Two files should be downloaded and placed under appropriate places. Incase of MacVim, filetype.vim must be edited (so if you do not like to edit the original distribution file, I do not recommend this). installation filetype.vim download from github --> filetype.vim