Aurelien's Image J plug-ins

Aurelien's Image J plug-ins

1. Moving average (simialr to the running average macro by Jens)

2. Thresholding Fluorescence image stacks.

• a) Threshold determined by mean intensiity and standard deviation of the whole image. the threshold value is determined by n*s.d., where n is an user-input value.
• b) same principle but the threshold value is locally determined. A frame is divided by grids and local threshold is determined in each position.

3. Radial-kyomograph: plots radial intensity profile (x) vs Time of a sequence.

4. Intensity profile dynamics in a segment of radius (used for FRAP or FLIP).

5. 3D tracking, center of mass search in xy plane + max intensity serach in z axis.